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xylt1 xylosyltransferase I [ Boleophthalmus pectinirostris (great blue-spotted mudskipper) ]

Gene ID: 110175714, updated on 15-Mar-2024

Summary

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Gene symbol
xylt1
Gene description
xylosyltransferase I
Locus tag
NL108_003709
Gene type
protein coding
RefSeq status
MODEL
Organism
Boleophthalmus pectinirostris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Gobiiformes; Gobioidei; Gobiidae; Oxudercinae; Boleophthalmus
Orthologs
human zebrafish all
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Genomic context

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See xylt1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM2622593v1 (GCF_026225935.1) Unplaced Scaffold NW_026571190.1 (20118221..20189211, complement)
100 previous assembly BP.fa (GCF_000788275.1) Unplaced Scaffold NW_018348411.1 (672076..740894)

NW_026571190.1Genomic Context describing neighboring genes Neighboring gene notum pectinacetylesterase 2 Neighboring gene ribosomal protein S15a Neighboring gene nodal modulator Neighboring gene 5S ribosomal RNA Neighboring gene transmembrane channel like 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xylosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_026225935.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2622593v1 Primary Assembly

Genomic

  1. NW_026571190.1 Reference ASM2622593v1 Primary Assembly

    Range
    20118221..20189211 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020941922.2 → XP_020797581.1  xylosyltransferase 1

    Conserved Domains (2) summary
    pfam12529
    Location:589 → 771
    Xylo_C; Xylosyltransferase C terminal
    cl27418
    Location:304 → 556
    Branch; Core-2/I-Branching enzyme
Nucleotide Protein
Heading Accession and Version

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