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chsy1 chondroitin sulfate synthase 1 [ Boleophthalmus pectinirostris (great blue-spotted mudskipper) ]

Gene ID: 110162594, updated on 15-Mar-2024

Summary

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Gene symbol
chsy1
Gene description
chondroitin sulfate synthase 1
Locus tag
NL108_008343
Gene type
protein coding
RefSeq status
MODEL
Organism
Boleophthalmus pectinirostris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Gobiiformes; Gobioidei; Gobiidae; Oxudercinae; Boleophthalmus
Orthologs
human zebrafish all
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Genomic context

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See chsy1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM2622593v1 (GCF_026225935.1) Unplaced Scaffold NW_026571140.1 (9714806..9723718)
100 previous assembly BP.fa (GCF_000788275.1) Unplaced Scaffold NW_018355324.1 (1060895..1069629)

NW_026571140.1Genomic Context describing neighboring genes Neighboring gene small nuclear ribonucleoprotein polypeptide A' Neighboring gene selenoprotein S Neighboring gene leucine-rich repeat kinase 1 Neighboring gene leucine-rich repeat serine/threonine-protein kinase 1-like Neighboring gene V-set and transmembrane domain containing 2B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate synthase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_026225935.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2622593v1 Primary Assembly

Genomic

  1. NW_026571140.1 Reference ASM2622593v1 Primary Assembly

    Range
    9714806..9723718
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020927493.2 → XP_020783152.1  chondroitin sulfate synthase 1

    Conserved Domains (2) summary
    pfam05679
    Location:235 → 773
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:84 → 305
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
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