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b4galt6 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6 [ Boleophthalmus pectinirostris (great blue-spotted mudskipper) ]

Gene ID: 110161219, updated on 15-Mar-2024

Summary

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Gene symbol
b4galt6
Gene description
UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6
Locus tag
NL108_013738
Gene type
protein coding
RefSeq status
MODEL
Organism
Boleophthalmus pectinirostris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Gobiiformes; Gobioidei; Gobiidae; Oxudercinae; Boleophthalmus
Orthologs
human zebrafish all
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Genomic context

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See b4galt6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM2622593v1 (GCF_026225935.1) Unplaced Scaffold NW_026571473.1 (29189007..29241136, complement)
100 previous assembly BP.fa (GCF_000788275.1) Unplaced Scaffold NW_018354995.1 (3223307..3266996, complement)

NW_026571473.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110161233 Neighboring gene transthyretin (prealbumin, amyloidosis type I) Neighboring gene replication factor C (activator 1) 4 Neighboring gene MCF.2 cell line derived transforming sequence-like 2 Neighboring gene lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycosphingolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-galactosyltransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_026225935.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2622593v1 Primary Assembly

Genomic

  1. NW_026571473.1 Reference ASM2622593v1 Primary Assembly

    Range
    29189007..29241136 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020925936.2 → XP_020781595.1  beta-1,4-galactosyltransferase 6

    Conserved Domains (1) summary
    cd00899
    Location:155 → 371
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

RNA

  1. XR_008633529.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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