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LOC110121440 VISTA enhancer hs1751 [ Homo sapiens (human) ]

Gene ID: 110121440, updated on 10-Oct-2023

Summary

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Gene symbol
LOC110121440
Gene description
VISTA enhancer hs1751
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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Location:
chromosome: 18
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (12277697..12281651)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (12440692..12444646)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (12277696..12281650)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904253 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9306 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:12253496-12254102 Neighboring gene uncharacterized LOC105371996 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:12258258-12258758 Neighboring gene cell death inducing DFFA like effector a Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9307 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:12276271-12276894 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:12287027-12288022 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:12288023-12289016 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:12289267-12290030 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9308 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9309 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9310 Neighboring gene RNA, U6 small nuclear 170, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:12318543-12319043 Neighboring gene tubulin beta 6 class V Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:12327565-12328414 Neighboring gene AFG3 like matrix AAA peptidase subunit 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_054053.1 

    Range
    101..4055
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    12277697..12281651
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    12440692..12444646
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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