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LOC110121431 VISTA enhancer hs1688 [ Homo sapiens (human) ]

Gene ID: 110121431, updated on 10-Oct-2023

Summary

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Gene symbol
LOC110121431
Gene description
VISTA enhancer hs1688
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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Location:
chromosome: 14
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (68376040..68379058)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (62583025..62586043)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (68842757..68845775)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene RAD51 paralog B Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8592 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8593 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8594 Neighboring gene RNA, 7SL, cytoplasmic 108, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8595 Neighboring gene Sharpr-MPRA regulatory region 2611 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8596 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8597 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8598 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8599 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8600 Neighboring gene Sharpr-MPRA regulatory region 10624 Neighboring gene Sharpr-MPRA regulatory region 2571 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8602 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8603 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8604 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8605 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8606 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr14:68810048-68810732 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5867 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:68830720-68831247 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:68831248-68831776 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8607 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:68838900-68839755 Neighboring gene uncharacterized LOC101927971 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:68863880-68864606 Neighboring gene ribosomal protein L7a pseudogene 5 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8608 Neighboring gene peptidylprolyl isomerase A pseudogene 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_054045.1 

    Range
    101..3119
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    68376040..68379058
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    62583025..62586043
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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