U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC110121411 VISTA enhancer hs1613 [ Homo sapiens (human) ]

Gene ID: 110121411, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Gene symbol
LOC110121411
Gene description
VISTA enhancer hs1613
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 16
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (86909761..86912569)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (92977922..92980730)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (86943367..86946175)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984819 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:86806242-86806760 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:86806761-86807277 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr16:86834327-86835266 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:86857754-86858402 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:86860345-86860992 Neighboring gene uncharacterized LOC124903746 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:86883968-86884468 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:86902487-86902990 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:86902991-86903494 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:86928957-86929739 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:86934630-86935133 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:86935134-86935636 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:86958578-86959522 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:86959523-86960466 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:86989033-86989533 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:87002635-87003135 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:87012327-87012827 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:87013951-87014452 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:87046420-87046981 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:87046982-87047542 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:87062122-87062622 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:87062623-87063123 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:87067292-87067465 Neighboring gene long intergenic non-protein coding RNA 2181 Neighboring gene NANOG hESC enhancer GRCh37_chr16:87122126-87122775 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr16:87127447-87128373 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:87132609-87133324 Neighboring gene uncharacterized LOC105371394

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_054025.1 

    Range
    101..2909
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    86909761..86912569
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    92977922..92980730
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases