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LOC110121379 VISTA enhancer hs1491 [ Homo sapiens (human) ]

Gene ID: 110121379, updated on 10-Oct-2023

Summary

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Gene symbol
LOC110121379
Gene description
VISTA enhancer hs1491
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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Location:
chromosome: 10
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (78535692..78537330)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (79404869..79406507)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (80295449..80297087)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984245 Neighboring gene Sharpr-MPRA regulatory region 14781 Neighboring gene uncharacterized LOC107984246 Neighboring gene uncharacterized LOC105378378 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80231795-80232752 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80303319-80303820 Neighboring gene MPRA-validated peak1025 silencer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:80319111-80320024 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80330027-80330528 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80330529-80331028 Neighboring gene uncharacterized LOC105378379 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80491819-80492320 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80492321-80492820 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80516074-80516712 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80517352-80517990 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80517991-80518628 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3618 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80527882-80528481 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80536737-80537624 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:80561226-80561763 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80587578-80588078 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80611199-80611786 Neighboring gene NANOG hESC enhancer GRCh37_chr10:80619958-80620464 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:80635056-80635704 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80660163-80660663 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80670266-80670770 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80670771-80671275 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr10:80673020-80673539 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80673540-80674060 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80675693-80676194 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80676195-80676694 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80696869-80697391 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80715276-80715991 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80724486-80725046 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:80726805-80727304 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80727311-80728094 Neighboring gene ZMIZ1 antisense RNA 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80731917-80732848 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2519 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2520 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2521 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3619 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80739778-80740278 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80740279-80740779 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3620 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:80742018-80742209 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80756413-80756912 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80768616-80769116 Neighboring gene uncharacterized LOC112268062

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053993.1 

    Range
    101..1739
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    78535692..78537330
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    79404869..79406507
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
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