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LOC110121363 VISTA enhancer hs1427 [ Homo sapiens (human) ]

Gene ID: 110121363, updated on 10-Oct-2023

Summary

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Gene symbol
LOC110121363
Gene description
VISTA enhancer hs1427
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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See LOC110121363 in Genome Data Viewer
Location:
chromosome: 12
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (59066409..59068586)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (59053694..59055871)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (59460190..59462367)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene LRIG3 divergent transcript Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:59448831-59450030 Neighboring gene ribosomal protein S6 pseudogene 22 Neighboring gene methyltransferase like 15 pseudogene 2 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_30249 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6571 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_30360 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr12:59587037-59588236 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:59716766-59717659 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:59720343-59721236 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:59722131-59723023 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:59751164-59752363 Neighboring gene RNA, U6 small nuclear 279, pseudogene Neighboring gene RNA, U6 small nuclear 871, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053977.1 

    Range
    101..2278
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    59066409..59068586
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    59053694..59055871
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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