U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC110121272 VISTA enhancer hs2185 [ Homo sapiens (human) ]

Gene ID: 110121272, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Gene symbol
LOC110121272
Gene description
VISTA enhancer hs2185
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (173265198..173269966)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (173805281..173810049)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (172692201..172696969)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:172656189-172656855 Neighboring gene ribosomal protein L7a pseudogene 33 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:172659129-172660008 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:172660009-172660888 Neighboring gene NK2 homeobox 5 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:172665705-172666278 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:172672012-172672748 Neighboring gene uncharacterized LOC105377731 Neighboring gene MPRA-validated peak5581 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16637 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23652 Neighboring gene uncharacterized LOC124901136 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23653 Neighboring gene RNA, 5S ribosomal pseudogene 200

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053887.1 

    Range
    101..4869
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    173265198..173269966
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    173805281..173810049
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases