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LOC110121253 VISTA enhancer hs2077 [ Homo sapiens (human) ]

Gene ID: 110121253, updated on 17-Sep-2024

Summary

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Gene symbol
LOC110121253
Gene description
VISTA enhancer hs2077
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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See LOC110121253 in Genome Data Viewer
Location:
chromosome: 7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (136057880..136060968)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (137365139..137368227)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (135742628..135745716)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375522 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:135469316-135469498 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:135483822-135484042 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:135531289-135531441 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18681 Neighboring gene uncharacterized LOC105375523 Neighboring gene RNA, U6 small nuclear 223, pseudogene Neighboring gene myotrophin Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18682 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18683 Neighboring gene MPRA-validated peak6752 silencer Neighboring gene MPRA-validated peak6754 silencer Neighboring gene MPRA-validated peak6755 silencer Neighboring gene MPRA-validated peak6756 silencer Neighboring gene MPRA-validated peak6757 silencer Neighboring gene MPRA-validated peak6758 silencer Neighboring gene TRPC6 pseudogene 8 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26722 Neighboring gene MPRA-validated peak6760 silencer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:136083954-136084620 Neighboring gene ZP3 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053868.1 

    Range
    101..3189
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    136057880..136060968
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    137365139..137368227
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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