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LOC110121231 VISTA enhancer hs1955 [ Homo sapiens (human) ]

Gene ID: 110121231, updated on 17-Sep-2024

Summary

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Gene symbol
LOC110121231
Gene description
VISTA enhancer hs1955
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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See LOC110121231 in Genome Data Viewer
Location:
chromosome: 6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (163961310..163965357)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (165326095..165330142)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (164382342..164386389)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901499 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:164171433-164172035 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:164202059-164202593 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25424 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25425 Neighboring gene RNA, 7SL, cytoplasmic 366, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:164286848-164287348 Neighboring gene uncharacterized LOC105378102 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:164361763-164362454 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:164364039-164364692 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:164365590-164366091 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:164366092-164366592 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:164372861-164373361 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:164381233-164382004 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:164489884-164491083 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:164500883-164501384 Neighboring gene uncharacterized LOC105378106 Neighboring gene Sharpr-MPRA regulatory region 12678 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:164648817-164650016 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:164664227-164665426 Neighboring gene uncharacterized LOC105378109

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053846.1 

    Range
    101..4148
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    163961310..163965357
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    165326095..165330142
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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