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LOC110121139 VISTA enhancer hs1546 [ Homo sapiens (human) ]

Gene ID: 110121139, updated on 10-Oct-2023

Summary

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Gene symbol
LOC110121139
Gene description
VISTA enhancer hs1546
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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Location:
chromosome: 1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (38370324..38372434)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (38237554..38239663)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (38835996..38838106)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:38605789-38606702 Neighboring gene uncharacterized LOC105378654 Neighboring gene long intergenic non-protein coding RNA 2786 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 788 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 789 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 790 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 791 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 792 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38671184-38671684 Neighboring gene long intergenic non-protein coding RNA 1343 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38704546-38705076 Neighboring gene VISTA enhancer hs1001 Neighboring gene VISTA enhancer hs2088 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:38736051-38736648 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:38736899-38737076 Neighboring gene uncharacterized LOC105378657 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38827443-38827961 Neighboring gene tubulin beta 6 class V pseudogene 1 Neighboring gene RNA, U6 small nuclear 753, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053758.1 

    Range
    101..2211
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    38370324..38372434
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    38237554..38239663
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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