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LOC110121118 VISTA enhancer hs1473 [ Homo sapiens (human) ]

Gene ID: 110121118, updated on 10-Oct-2023

Summary

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Gene symbol
LOC110121118
Gene description
VISTA enhancer hs1473
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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Location:
chromosome: 5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (135433909..135436454)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (135961096..135963623)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (134769599..134772144)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene PITX1 antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:134574510-134575316 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:134582317-134583516 Neighboring gene long intergenic non-protein coding RNA 2900 Neighboring gene MPRA-validated peak5478 silencer Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:134678129-134679328 Neighboring gene macroH2A.1 histone Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23170 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16373 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16374 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:134735673-134736178 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:134735167-134735672 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16375 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:134739095-134739661 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23171 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23172 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:134784907-134785408 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:134785409-134785908 Neighboring gene uncharacterized LOC124901073 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23173 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23174 Neighboring gene dendritic cell associated nuclear protein 1 Neighboring gene TIFA inhibitor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053737.1 

    Range
    101..2646
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    135433909..135436454
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    135961096..135963623
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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