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LOC110121082 VISTA enhancer hs1371 [ Homo sapiens (human) ]

Gene ID: 110121082, updated on 10-Oct-2023

Summary

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Gene symbol
LOC110121082
Gene description
VISTA enhancer hs1371
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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Location:
chromosome: 5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (125372642..125374699)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (125888910..125890969)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (124708335..124710392)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101927421 Neighboring gene VISTA enhancer hs1643 Neighboring gene high mobility group box 1 pseudogene 22 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:124683978-124684543 Neighboring gene NANOG hESC enhancer GRCh37_chr5:124684958-124685473 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:124699839-124700406 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:124700407-124700973 Neighboring gene RN7SK pseudogene 117 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:124747359-124747858 Neighboring gene uncharacterized LOC124901056 Neighboring gene long intergenic non-protein coding RNA 2240 Neighboring gene Sharpr-MPRA regulatory region 7820 Neighboring gene MPRA-validated peak5453 silencer Neighboring gene ribosomal protein S3A pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053702.1 

    Range
    101..2158
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    125372642..125374699
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    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187549.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    93177..95234
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    125888910..125890969
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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