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LOC110121072 VISTA enhancer hs1350 [ Homo sapiens (human) ]

Gene ID: 110121072, updated on 17-Sep-2024

Summary

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Gene symbol
LOC110121072
Gene description
VISTA enhancer hs1350
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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See LOC110121072 in Genome Data Viewer
Location:
chromosome: 9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (3401031..3402562)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (3404809..3406340)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (3401031..3402562)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene coactivator associated arginine methyltransferase 1 pseudogene 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:3181301-3181935 Neighboring gene uncharacterized LOC105375959 Neighboring gene long intergenic non-protein coding RNA 1231 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:3290904-3291705 Neighboring gene regulatory factor X3 Neighboring gene Sharpr-MPRA regulatory region 5337 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28139 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr9:3478271-3479470 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:3525142-3525758 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19740 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28141 Neighboring gene uncharacterized LOC124902110 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28142 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:3577789-3577989 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:3674142-3675341 Neighboring gene RFX3 divergent transcript

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053692.1 

    Range
    101..1632
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    3401031..3402562
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    3404809..3406340
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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