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LOC110120994 VISTA enhancer hs1116 [ Homo sapiens (human) ]

Gene ID: 110120994, updated on 10-Oct-2023

Summary

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Gene symbol
LOC110120994
Gene description
VISTA enhancer hs1116
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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Location:
chromosome: 3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (71397676..71399658)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (71434351..71436333)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (71446827..71448809)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene forkhead box P1 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:71354949-71355604 Neighboring gene FOXP1 antisense RNA 1 Neighboring gene uncharacterized LOC124906248 Neighboring gene Sharpr-MPRA regulatory region 6361 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20060 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:71463501-71464005 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20061 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20063 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20062 Neighboring gene Sharpr-MPRA regulatory region 10822 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:71546600-71547538 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr3:71552767-71553966 Neighboring gene Sharpr-MPRA regulatory region 15380 Neighboring gene VISTA enhancer hs1149 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14520 Neighboring gene Sharpr-MPRA regulatory region 11865 Neighboring gene microRNA 1284 Neighboring gene FOXP1 divergent transcript

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053615.1 

    Range
    101..2083
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    71397676..71399658
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    71434351..71436333
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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