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LOC110120959 VISTA enhancer hs1002 [ Homo sapiens (human) ]

Gene ID: 110120959, updated on 10-Oct-2023

Summary

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Gene symbol
LOC110120959
Gene description
VISTA enhancer hs1002
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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See LOC110120959 in Genome Data Viewer
Location:
chromosome: 1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (87642401..87643713)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (87485621..87486933)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (88108084..88109396)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985408 Neighboring gene uncharacterized LOC105378835 Neighboring gene VISTA enhancer hs1161 Neighboring gene VISTA enhancer hs1217 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:88079486-88080685 Neighboring gene uncharacterized LOC107985518 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:88149733-88150234 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:88151217-88151832 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:88153692-88154891 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:88188659-88189364 Neighboring gene Sharpr-MPRA regulatory region 1395 Neighboring gene uncharacterized LOC124904212 Neighboring gene MPRA-validated peak307 silencer Neighboring gene long intergenic non-protein coding RNA 1773

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053580.1 

    Range
    101..1413
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    87642401..87643713
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    87485621..87486933
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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