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LOC110120922 VISTA enhancer hs692 [ Homo sapiens (human) ]

Gene ID: 110120922, updated on 10-Oct-2023

Summary

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Gene symbol
LOC110120922
Gene description
VISTA enhancer hs692
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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See LOC110120922 in Genome Data Viewer
Location:
chromosome: 11
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (15565495..15566768)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (15663442..15664714)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (15587041..15588314)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:15096041-15096542 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3176 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3177 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4478 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:15135643-15136176 Neighboring gene calcitonin related polypeptide beta Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:15196965-15197488 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:15197489-15198010 Neighboring gene INSC spindle orientation adaptor protein Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3178 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:15260043-15260544 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:15260545-15261044 Neighboring gene NANOG hESC enhancer GRCh37_chr11:15363023-15363618 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:15454895-15455061 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr11:15467942-15469141 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:15581971-15582472 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr11:15583102-15584301 Neighboring gene uncharacterized LOC105376568 Neighboring gene long intergenic non-protein coding RNA 2751 Neighboring gene MPRA-validated peak1210 silencer Neighboring gene NANOG hESC enhancer GRCh37_chr11:15610492-15610993 Neighboring gene NANOG hESC enhancer GRCh37_chr11:15643853-15644482 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3179 Neighboring gene uncharacterized LOC105376567 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:15732871-15733685

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053544.1 

    Range
    101..1374
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    15565495..15566768
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    15663442..15664714
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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