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LOC110120917 VISTA enhancer hs660 [ Homo sapiens (human) ]

Gene ID: 110120917, updated on 10-Oct-2023

Summary

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Gene symbol
LOC110120917
Gene description
VISTA enhancer hs660
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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Location:
chromosome: 15
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (66906636..66907796)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (64728457..64729617)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (67198974..67200134)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370869 Neighboring gene uncharacterized LOC105376718 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6570 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:67158541-67159040 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_40570 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:67169867-67170839 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:67175589-67176104 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr15:67179855-67181054 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr15:67192812-67194011 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6571 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6572 Neighboring gene Sharpr-MPRA regulatory region 9309 Neighboring gene SMAD3 associated long non-coding RNA Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr15:67248284-67249483 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:67287649-67287867 Neighboring gene SMAD3 divergent transcript Neighboring gene high mobility group nucleosomal binding domain 2 pseudogene 47

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053539.1 

    Range
    101..1261
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    66906636..66907796
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    64728457..64729617
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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