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LOC110120910 VISTA enhancer hs622 [ Homo sapiens (human) ]

Gene ID: 110120910, updated on 10-Oct-2023

Summary

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Gene symbol
LOC110120910
Gene description
VISTA enhancer hs622
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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See LOC110120910 in Genome Data Viewer
Location:
chromosome: 14
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (98999863..99000807)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (93231572..93232516)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (99466200..99467144)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370658 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:99351855-99352361 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr14:99362025-99362622 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr14:99362623-99363218 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:99370948-99371448 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:99410740-99411285 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr14:99451240-99451858 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:99458699-99459274 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:99460134-99460723 Neighboring gene uncharacterized LOC107984696 Neighboring gene ribosomal protein L3 pseudogene 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:99496427-99496927 Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:99504757-99505257 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:99559873-99560872 Neighboring gene uncharacterized LOC105370659 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:99600505-99601228 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:99608696-99609604 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:99640571-99641086 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:99658267-99658828 Neighboring gene uncharacterized LOC124903412 Neighboring gene BCL11 transcription factor B Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:99677677-99678177

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053532.1 

    Range
    101..1045
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    98999863..99000807
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    93231572..93232516
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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