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LOC110120896 VISTA enhancer hs572 [ Homo sapiens (human) ]

Gene ID: 110120896, updated on 10-Oct-2023

Summary

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Gene symbol
LOC110120896
Gene description
VISTA enhancer hs572
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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Location:
chromosome: 15
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (37220473..37222356)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (35025851..35027734)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (37512674..37514557)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene Meis homeobox 2 Neighboring gene microRNA 8063 Neighboring gene Sharpr-MPRA regulatory region 4521 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr15:37337602-37338196 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr15:37338197-37338789 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:37386941-37387802 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6294 Neighboring gene uncharacterized LOC124903465 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6295 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9197 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9196 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6296 Neighboring gene NANOG hESC enhancer GRCh37_chr15:37398796-37399337 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6297 Neighboring gene NANOG hESC enhancer GRCh37_chr15:37528451-37528979 Neighboring gene VISTA enhancer hs599 Neighboring gene uncharacterized LOC105370772 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:37718991-37719632 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:37719633-37720272 Neighboring gene ribosomal protein S15 pseudogene 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053518.1 

    Range
    101..1984
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    37220473..37222356
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    35025851..35027734
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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