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LOC110120872 VISTA enhancer hs384 [ Homo sapiens (human) ]

Gene ID: 110120872, updated on 10-Oct-2023

Summary

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Gene symbol
LOC110120872
Gene description
VISTA enhancer hs384
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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Location:
chromosome: 19
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (30512034..30513355)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (33032524..33033845)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (31002941..31004262)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14426 Neighboring gene VISTA enhancer hs382 Neighboring gene uncharacterized LOC107985271 Neighboring gene VISTA enhancer hs721 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14427 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:30583442-30583972 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:30583973-30584501 Neighboring gene TATA-box binding protein associated factor 9 pseudogene 3 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:30589624-30589867 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:30607607-30608158 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:30608159-30608708 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:30648008-30648968 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10475 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:30714014-30714514 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:30714515-30715015 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10476 Neighboring gene VISTA enhancer hs858 Neighboring gene VISTA enhancer hs383 Neighboring gene zinc finger protein 536 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:30811773-30812272 Neighboring gene VISTA enhancer hs430 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr19:30864335-30864836 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:30866004-30866504 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:30875860-30876360 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:30948561-30949071 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:31042441-31042941 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:31044111-31044612 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:31055005-31055756 Neighboring gene uncharacterized LOC124904685 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:31182908-31183532 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:31183533-31184155 Neighboring gene MPRA-validated peak3430 silencer Neighboring gene uncharacterized LOC105372354

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053495.1 

    Range
    101..1422
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    30512034..30513355
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    33032524..33033845
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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