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LOC110120804 VISTA enhancer hs925 [ Homo sapiens (human) ]

Gene ID: 110120804, updated on 10-Oct-2023

Summary

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Gene symbol
LOC110120804
Gene description
VISTA enhancer hs925
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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Location:
chromosome: 7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (70638137..70639345)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (71861760..71862968)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (70103123..70104331)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene activator of transcription and developmental regulator AUTS2 Neighboring gene uncharacterized LOC124901669 Neighboring gene uncharacterized LOC124901668 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:70061071-70061572 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr7:70079304-70079836 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:70095779-70096557 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:70096558-70097335 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:70111719-70112218 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26110 Neighboring gene MPRA-validated peak6564 silencer Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:70145703-70146628 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:70146629-70147554 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18228 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18230 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18229 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18227 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18226 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18231 Neighboring gene uncharacterized LOC107986709 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr7:70164947-70165914 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:70168599-70169443 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:70176010-70176532 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26111 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr7:70189901-70190592 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18232 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:70193362-70193882 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:70193883-70194402 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18233 Neighboring gene uncharacterized LOC105375347

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053429.1 

    Range
    101..1309
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    70638137..70639345
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    71861760..71862968
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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