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LOC110120781 VISTA enhancer hs834 [ Homo sapiens (human) ]

Gene ID: 110120781, updated on 10-Oct-2023

Summary

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Gene symbol
LOC110120781
Gene description
VISTA enhancer hs834
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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See LOC110120781 in Genome Data Viewer
Location:
chromosome: 8
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (37637791..37638686)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (37913097..37913992)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (37495309..37496204)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1605 Neighboring gene uncharacterized LOC105379379 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:37417549-37418050 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:37418051-37418550 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27226 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:37438583-37439182 Neighboring gene uncharacterized LOC105379378 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:37439183-37439782 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:37452253-37453174 Neighboring gene uncharacterized LOC105379380 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:37462486-37462996 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:37467873-37468422 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:37468423-37468972 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27227 Neighboring gene uncharacterized LOC124901931 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:37494669-37495193 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:37496445-37496652 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr8:37532700-37533200 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr8:37533201-37533701 Neighboring gene RNA, U6 small nuclear 607, pseudogene Neighboring gene Sharpr-MPRA regulatory region 5217 Neighboring gene uncharacterized LOC124901932 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:37551939-37552123 Neighboring gene uncharacterized LOC124901933

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053406.1 

    Range
    101..996
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    37637791..37638686
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    37913097..37913992
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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