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HHC2:066522 HHc2:066522 enhancer downstream of MEIS1 [ Homo sapiens (human) ]

Gene ID: 110120780, updated on 10-Oct-2023

Summary

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Gene symbol
HHC2:066522
Gene description
HHc2:066522 enhancer downstream of MEIS1
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This region represents an enhancer located approximately 470 kb downstream of the MEIS1 gene. This enhancer can drive expression of a reporter transgene in the developing brain. [provided by RefSeq, Oct 2017]
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Genomic context

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Location:
chromosome: 2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (67053942..67055675)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (67063514..67065247)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (67281074..67282807)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1799 Neighboring gene long intergenic non-protein coding RNA 1628 Neighboring gene uncharacterized LOC105374785 Neighboring gene HHc2:066104 enhancer downstream of MEIS1 Neighboring gene long intergenic non-protein coding RNA 1828 Neighboring gene long intergenic non-protein coding RNA 1829 Neighboring gene uncharacterized LOC101927661 Neighboring gene HHc2:066644 enhancer downstream of MEIS1 Neighboring gene HHc2:066683 enhancer downstream of MEIS1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:67556875-67557456 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:67558406-67558919 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:67559946-67560457 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:67560458-67560970 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:67561484-67561996 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:67583148-67583648 Neighboring gene ETAA1 activator of ATR kinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and analysis of conserved cis-regulatory regions of the MEIS1 gene. Royo JL, et al. PLoS One, 2012. PMID 22448256, Free PMC Article
  2. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • VISTA enhancer hs831

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053405.2 

    Range
    101..1834
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    67053942..67055675
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    67063514..67065247
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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