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LOC110120760 VISTA enhancer hs754 [ Homo sapiens (human) ]

Gene ID: 110120760, updated on 10-Oct-2023

Summary

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Gene symbol
LOC110120760
Gene description
VISTA enhancer hs754
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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Location:
chromosome: 5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (3197751..3198828)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (3112518..3113595)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (3197865..3198942)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374621 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:3079616-3080276 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:3099596-3100470 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:3100471-3101344 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:3101345-3102218 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:3103093-3103967 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:3127153-3127350 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:3133320-3133820 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:3133821-3134321 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:3176917-3178116 Neighboring gene VISTA enhancer hs603 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:3185307-3185822 Neighboring gene VISTA enhancer hs533 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:3191198-3191363 Neighboring gene long intergenic non-protein coding RNA 1377 Neighboring gene NANOG hESC enhancer GRCh37_chr5:3251839-3252659 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:3266942-3267940 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:3301153-3301654 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:3301655-3302154 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:3310881-3312080 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:3325507-3325688 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:3346175-3346676 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:3346677-3347176 Neighboring gene long intergenic non-protein coding RNA 1019 Neighboring gene long intergenic non-protein coding RNA 2162 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:3490824-3491324 Neighboring gene long intergenic non-protein coding RNA 1017

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053385.1 

    Range
    101..1178
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    3197751..3198828
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    3112518..3113595
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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