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LOC110120691 VISTA enhancer hs521 [ Homo sapiens (human) ]

Gene ID: 110120691, updated on 10-Oct-2023

Summary

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Gene symbol
LOC110120691
Gene description
VISTA enhancer hs521
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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See LOC110120691 in Genome Data Viewer
Location:
chromosome: 2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (235864814..235866052)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (236354623..236355861)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (236773458..236774696)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_57171 Neighboring gene trinucleotide repeat containing 17 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236475811-236476311 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236494510-236495010 Neighboring gene Sharpr-MPRA regulatory region 15430 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:236505422-236506274 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236539863-236540736 Neighboring gene Sharpr-MPRA regulatory region 12909 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:236567081-236567736 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236599839-236600339 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236599338-236599838 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:236617362-236618561 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236632223-236632790 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236632791-236633358 Neighboring gene uncharacterized LOC105373942 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236696882-236697382 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236701667-236702167 Neighboring gene Sharpr-MPRA regulatory region 1374 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:236735809-236737008 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236757968-236758468 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:236763280-236764479 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236784736-236785236 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236785237-236785737 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236801538-236802038 Neighboring gene NANOG hESC enhancer GRCh37_chr2:236812532-236813067 Neighboring gene NANOG hESC enhancer GRCh37_chr2:236813068-236813602 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236814296-236814796 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236814797-236815297 Neighboring gene thymosin beta 10 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236842540-236843040 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236843041-236843541 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236859019-236859518 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236863470-236863970 Neighboring gene uncharacterized LOC124907999 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236881395-236881894 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236908700-236909590 Neighboring gene Sharpr-MPRA regulatory region 6211

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053317.1 

    Range
    101..1339
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    235864814..235866052
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    236354623..236355861
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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