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LOC110120682 VISTA enhancer hs435 [ Homo sapiens (human) ]

Gene ID: 110120682, updated on 10-Oct-2023

Summary

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Gene symbol
LOC110120682
Gene description
VISTA enhancer hs435
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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Location:
chromosome: 3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (62374191..62374896)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (62417706..62418411)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (62359866..62360571)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 9750 Neighboring gene VISTA enhancer hs434 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:62353809-62354715 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:62354716-62355621 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:62357949-62358508 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:62358509-62359066 Neighboring gene centrosomal protein 15 Neighboring gene uncharacterized LOC105377647 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:62362229-62362828 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:62362829-62363426 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:62400506-62401328 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:62401329-62402151 Neighboring gene VISTA enhancer hs1316 Neighboring gene FEZ family zinc finger 2 Neighboring gene calcium dependent secretion activator Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:62523426-62524136 Neighboring gene Sharpr-MPRA regulatory region 8400 Neighboring gene Sharpr-MPRA regulatory region 14545 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20029 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20030 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:62654458-62654958 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:62654959-62655459 Neighboring gene ribosomal protein L14 pseudogene 2 Neighboring gene RNA, 7SL, cytoplasmic 863, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053308.1 

    Range
    101..806
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    62374191..62374896
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    62417706..62418411
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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