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LOC110120667 VISTA enhancer hs393 [ Homo sapiens (human) ]

Gene ID: 110120667, updated on 10-Oct-2023

Summary

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Gene symbol
LOC110120667
Gene description
VISTA enhancer hs393
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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See LOC110120667 in Genome Data Viewer
Location:
chromosome: 2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (58971770..58973394)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (58976744..58978368)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (59198905..59200529)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:58724227-58724831 Neighboring gene IK cytokine, down-regulator of HLA II pseudogene Neighboring gene VISTA enhancer hs1174 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr2:58762333-58763089 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:58766943-58767526 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:58767527-58768108 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:58781578-58782078 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:58782079-58782579 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:58785797-58786470 Neighboring gene long intergenic non-protein coding RNA 1122 Neighboring gene VISTA enhancer hs1071 Neighboring gene VISTA enhancer hs1152 Neighboring gene VISTA enhancer hs1067 Neighboring gene VISTA enhancer hs1199 Neighboring gene uncharacterized LOC124907771 Neighboring gene VISTA enhancer hs1181 Neighboring gene NANOG hESC enhancer GRCh37_chr2:59181909-59182410 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:59269296-59269445 Neighboring gene VISTA enhancer hs975 Neighboring gene uncharacterized LOC105374754 Neighboring gene VISTA enhancer hs1119 Neighboring gene long intergenic non-protein coding RNA 1793 Neighboring gene VISTA enhancer hs836 Neighboring gene VISTA enhancer hs394 Neighboring gene RNA, U6 small nuclear 508, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053293.1 

    Range
    101..1725
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    58971770..58973394
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    58976744..58978368
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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