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LOC110120578 VISTA enhancer hs43 [ Homo sapiens (human) ]

Gene ID: 110120578, updated on 10-Oct-2023

Summary

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Gene symbol
LOC110120578
Gene description
VISTA enhancer hs43
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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See LOC110120578 in Genome Data Viewer
Location:
chromosome: 16
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (54541966..54544013)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (60339988..60342039)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (54575878..54577925)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:54318795-54319714 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:54319715-54320634 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:54320768-54321268 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:54321269-54321769 Neighboring gene VISTA enhancer hs51 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:54325084-54325965 Neighboring gene iroquois homeobox 3 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:54364959-54365668 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:54396413-54396916 Neighboring gene uncharacterized LOC105371272 Neighboring gene long intergenic non-protein coding RNA 2140 Neighboring gene NANOG hESC enhancer GRCh37_chr16:54459786-54460294 Neighboring gene NANOG hESC enhancer GRCh37_chr16:54464241-54464805 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:54523058-54523261 Neighboring gene long intergenic non-protein coding RNA 2183 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:54616376-54617284 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr16:54618909-54619453 Neighboring gene VISTA enhancer hs37 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:54658831-54659077 Neighboring gene uncharacterized LOC105371274

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053206.1 

    Range
    101..2148
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    54541966..54544013
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    60339988..60342039
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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