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LOC110120478 VISTA enhancer mm1557 [ Mus musculus (house mouse) ]

Gene ID: 110120478, updated on 9-Aug-2024

Summary

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Gene symbol
LOC110120478
Gene description
VISTA enhancer mm1557
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rr1849
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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See LOC110120478 in Genome Data Viewer
Location:
chromosome: 6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (65286686..65288673)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (65309702..65311689)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene DDB1 and CUL4 associated factor 6 pseudogene Neighboring gene STARR-seq mESC enhancer starr_16133 Neighboring gene STARR-seq mESC enhancer starr_16134 Neighboring gene predicted gene, 20177 Neighboring gene STARR-seq mESC enhancer starr_16135 Neighboring gene thiopurine S-methyltransferase pseudogene Neighboring gene pyroglutamylated RFamide peptide receptor like Neighboring gene zinc finger CCCH type containing 14 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • regulatory region 1849

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_054539.1 

    Range
    101..2088
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    65286686..65288673
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version