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LOC110115617 sulfoquinovosyl transferase SQD2 [ Dendrobium catenatum ]

Gene ID: 110115617, updated on 22-Oct-2023

Summary

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Gene symbol
LOC110115617
Gene description
sulfoquinovosyl transferase SQD2
Locus tag
MA16_Dca010090
Gene type
protein coding
RefSeq status
MODEL
Organism
Dendrobium catenatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Also known as
SUS6
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current ASM160598v2 (GCF_001605985.2) Unplaced Scaffold NW_021318726.1 (1127964..1147439, complement)
100 previous assembly ASM160598v1 (GCF_001605985.1) Unplaced Scaffold NW_018314465.1 (3906..23372)

NW_021318726.1Genomic Context describing neighboring genes Neighboring gene 50S ribosomal protein L4, chloroplastic Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene immune-associated nucleotide-binding protein 9-like Neighboring gene U11 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sulfolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast envelope IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sulfoquinovosyl transferase SQD2
Names
Sucrose synthase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dendrobium catenatum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM160598v2 Primary Assembly

Genomic

  1. NW_021318726.1 Reference ASM160598v2 Primary Assembly

    Range
    1127964..1147439 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020848888.2 → XP_020704547.1  sulfoquinovosyl transferase SQD2 isoform X2

    Conserved Domains (1) summary
    PLN02871
    Location:53 → 462
    PLN02871; UDP-sulfoquinovose:DAG sulfoquinovosyltransferase

  2. XM_020848889.2 → XP_020704548.1  sulfoquinovosyl transferase SQD2 isoform X3

    Conserved Domains (1) summary
    PLN02871
    Location:45 → 391
    PLN02871; UDP-sulfoquinovose:DAG sulfoquinovosyltransferase

  3. XM_020848887.2 → XP_020704546.1  sulfoquinovosyl transferase SQD2 isoform X1

    Conserved Domains (1) summary
    PLN02871
    Location:53 → 510
    PLN02871; UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Nucleotide Protein
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