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LOC110107768 transcription factor MYBS2-like [ Dendrobium catenatum ]

Gene ID: 110107768, updated on 22-Oct-2023

Summary

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Gene symbol
LOC110107768
Gene description
transcription factor MYBS2-like
Locus tag
MA16_Dca003941
Gene type
protein coding
RefSeq status
MODEL
Organism
Dendrobium catenatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Also known as
DIVARICATA
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Genomic context

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See LOC110107768 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
101 current ASM160598v2 (GCF_001605985.2) Unplaced Scaffold NW_021318852.1 (3858649..3862328, complement)
100 previous assembly ASM160598v1 (GCF_001605985.1) Unplaced Scaffold NW_018294883.1 (336004..339682, complement)

NW_021318852.1Genomic Context describing neighboring genes Neighboring gene uclacyanin-3 Neighboring gene ras-related protein RIC1 Neighboring gene phospholipase A1-Ibeta2, chloroplastic Neighboring gene oleosin 16 kDa-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in response to auxin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to ethylene IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to gibberellin IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor MYBS2-like
Names
Transcription factor DIVARICATA

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dendrobium catenatum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM160598v2 Primary Assembly

Genomic

  1. NW_021318852.1 Reference ASM160598v2 Primary Assembly

    Range
    3858649..3862328 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020838140.2 → XP_020693799.1  transcription factor MYBS2-like

    Conserved Domains (1) summary
    TIGR01557
    Location:90 → 142
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
Nucleotide Protein
Heading Accession and Version

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