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LOC110099293 starch synthase 3, chloroplastic/amyloplastic [ Dendrobium catenatum ]

Gene ID: 110099293, updated on 18-Sep-2024

Summary

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Gene symbol
LOC110099293
Gene description
starch synthase 3, chloroplastic/amyloplastic
Locus tag
MA16_Dca018619
Gene type
protein coding
RefSeq status
MODEL
Organism
Dendrobium catenatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Also known as
SS3
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Genomic context

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See LOC110099293 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
101 current ASM160598v2 (GCF_001605985.2) Unplaced Scaffold NW_021320001.1 (433766..492848, complement)
100 previous assembly ASM160598v1 (GCF_001605985.1) Unplaced Scaffold NW_018274601.1 (126610..186236)

NW_021320001.1Genomic Context describing neighboring genes Neighboring gene probable beta-1,3-galactosyltransferase 2 Neighboring gene polyphenol oxidase, chloroplastic Neighboring gene agamous-like MADS-box protein AGL29 Neighboring gene psbP-like protein 1, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables starch binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
starch synthase 3, chloroplastic/amyloplastic
Names
Soluble starch synthase 3, chloroplastic/amyloplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dendrobium catenatum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM160598v2 Primary Assembly

Genomic

  1. NW_021320001.1 Reference ASM160598v2 Primary Assembly

    Range
    433766..492848 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020826391.2 → XP_020682050.1  starch synthase 3, chloroplastic/amyloplastic isoform X1

    UniProtKB/TrEMBL
    A0A2I0VPH5
    Conserved Domains (1) summary
    cl28204
    Location:64 → 1149
    GlgA; Glycogen synthase [Carbohydrate transport and metabolism]

  2. XM_020826393.2 → XP_020682052.1  starch synthase 3, chloroplastic/amyloplastic isoform X2

    Conserved Domains (1) summary
    cl28204
    Location:64 → 1105
    GlgA; Glycogen synthase [Carbohydrate transport and metabolism]

  3. XM_020826390.2 → XP_020682049.1  starch synthase 3, chloroplastic/amyloplastic isoform X1

    UniProtKB/TrEMBL
    A0A2I0VPH5
    Conserved Domains (1) summary
    cl28204
    Location:64 → 1149
    GlgA; Glycogen synthase [Carbohydrate transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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