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LOC110092530 galactoside 2-alpha-L-fucosyltransferase [ Dendrobium catenatum ]

Gene ID: 110092530, updated on 22-Oct-2023

Summary

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Gene symbol
LOC110092530
Gene description
galactoside 2-alpha-L-fucosyltransferase
Locus tag
MA16_Dca006432
Gene type
protein coding
RefSeq status
MODEL
Organism
Dendrobium catenatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Also known as
FT1; MUR2
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Genomic context

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See LOC110092530 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
101 current ASM160598v2 (GCF_001605985.2) Unplaced Scaffold NW_021318711.1 (1922208..1930395, complement)
100 previous assembly ASM160598v1 (GCF_001605985.1) Unplaced Scaffold NW_018318998.1 (142073..150230, complement)

NW_021318711.1Genomic Context describing neighboring genes Neighboring gene caltractin Neighboring gene ethylene-responsive transcription factor ERF098 Neighboring gene protein disulfide-isomerase SCO2 Neighboring gene aquaporin PIP1-2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Concomitant loss of NDH complex-related genes within chloroplast and nuclear genomes in some orchids. Lin CS, et al. Plant J, 2017 Jun. PMID 28258650
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactoside 2-alpha-L-fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xyloglucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
galactoside 2-alpha-L-fucosyltransferase
Names
galactoside 2-alpha-L-fucosyltransferase-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dendrobium catenatum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM160598v2 Primary Assembly

Genomic

  1. NW_021318711.1 Reference ASM160598v2 Primary Assembly

    Range
    1922208..1930395 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020817118.2 → XP_020672777.1  galactoside 2-alpha-L-fucosyltransferase

    UniProtKB/TrEMBL
    A0A2I0X7R6
    Conserved Domains (1) summary
    cl16914
    Location:98 → 540
    O-FucT_like; GDP-fucose protein O-fucosyltransferase and related proteins
Nucleotide Protein
Heading Accession and Version

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