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UBXN2B UBX domain protein 2B [ Pogona vitticeps (central bearded dragon) ]

Gene ID: 110088853, updated on 15-Mar-2024

Summary

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Gene symbol
UBXN2B
Gene description
UBX domain protein 2B
See related
Ensembl:ENSPVIG00000011381
Gene type
protein coding
RefSeq status
MODEL
Organism
Pogona vitticeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Acrodonta; Agamidae; Amphibolurinae; Pogona
Orthologs
human mouse all
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Genomic context

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See UBXN2B in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current pvi1.1 (GCF_900067755.1) Unplaced Scaffold NW_018150711.1 (552053..597431)

NW_018150711.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110089753 Neighboring gene family with sequence similarity 110 member B Neighboring gene V-type proton ATPase subunit e 1 pseudogene Neighboring gene cholesterol 7-alpha-monooxygenase Neighboring gene syndecan binding protein Neighboring gene neutral sphingomyelinase activation associated factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018150711.1 Unplaced Scaffold Reference pvi1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in membrane fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear membrane reassembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UBX domain-containing protein 2B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pogona vitticeps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference pvi1.1

Genomic

  1. NW_018150711.1 Reference pvi1.1

    Range
    552053..597431
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020811465.1 → XP_020667124.1  UBX domain-containing protein 2B isoform X2

    UniProtKB/TrEMBL
    A0A6J0V940
    Conserved Domains (2) summary
    smart00553
    Location:171 → 263
    SEP; Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47
    cl00155
    Location:286 → 309
    UBQ; Ubiquitin-like proteins

  2. XM_020811473.1 → XP_020667132.1  UBX domain-containing protein 2B isoform X3

    UniProtKB/TrEMBL
    A0A6J0V2M1
    Conserved Domains (2) summary
    smart00553
    Location:171 → 263
    SEP; Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47
    cl00155
    Location:286 → 310
    UBQ; Ubiquitin-like proteins

  3. XM_020811453.1 → XP_020667112.1  UBX domain-containing protein 2B isoform X1

    UniProtKB/TrEMBL
    A0A6J0V2K4
    Related
    ENSPVIP00000014752.1, ENSPVIT00000018454.1
    Conserved Domains (2) summary
    cd01770
    Location:286 → 362
    p47_UBX; p47-like ubiquitin domain
    smart00553
    Location:171 → 263
    SEP; Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47

RNA

  1. XR_002302149.1 RNA Sequence

  2. XR_002302146.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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