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SGMS1 sphingomyelin synthase 1 [ Pogona vitticeps (central bearded dragon) ]

Gene ID: 110083115, updated on 15-Mar-2024

Summary

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Gene symbol
SGMS1
Gene description
sphingomyelin synthase 1
See related
Ensembl:ENSPVIG00000002193
Gene type
protein coding
RefSeq status
MODEL
Organism
Pogona vitticeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Acrodonta; Agamidae; Amphibolurinae; Pogona
Orthologs
human mouse all
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Genomic context

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See SGMS1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current pvi1.1 (GCF_900067755.1) Unplaced Scaffold NW_018150983.1 (1083550..1175795)

NW_018150983.1Genomic Context describing neighboring genes Neighboring gene multiple inositol polyphosphate phosphatase 1-like Neighboring gene multiple inositol-polyphosphate phosphatase 1 Neighboring gene APOBEC1 complementation factor Neighboring gene cGMP-dependent protein kinase 1-like Neighboring gene uncharacterized LOC110083119

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018150983.1 Unplaced Scaffold Reference pvi1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ceramide cholinephosphotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sphingomyelin synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylcholine:ceramide cholinephosphotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pogona vitticeps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference pvi1.1

Genomic

  1. NW_018150983.1 Reference pvi1.1

    Range
    1083550..1175795
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020801286.1 → XP_020656945.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    UniProtKB/TrEMBL
    A0A6J0UCR1
    Related
    ENSPVIP00000002580.1, ENSPVIT00000003326.1
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:276 → 349
    PAP2_C; PAP2 superfamily C-terminal

  2. XM_020801291.1 → XP_020656950.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    UniProtKB/TrEMBL
    A0A6J0UCR1
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:276 → 349
    PAP2_C; PAP2 superfamily C-terminal

  3. XM_020801285.1 → XP_020656944.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    UniProtKB/TrEMBL
    A0A6J0UCR1
    Related
    ENSPVIP00000002574.1, ENSPVIT00000003319.1
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:276 → 349
    PAP2_C; PAP2 superfamily C-terminal

  4. XM_020801290.1 → XP_020656949.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    UniProtKB/TrEMBL
    A0A6J0UCR1
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:276 → 349
    PAP2_C; PAP2 superfamily C-terminal

  5. XM_020801288.1 → XP_020656947.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    UniProtKB/TrEMBL
    A0A6J0UCR1
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:276 → 349
    PAP2_C; PAP2 superfamily C-terminal

  6. XM_020801289.1 → XP_020656948.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    UniProtKB/TrEMBL
    A0A6J0UCR1
    Related
    ENSPVIP00000002578.1, ENSPVIT00000003324.1
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:276 → 349
    PAP2_C; PAP2 superfamily C-terminal
Nucleotide Protein
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