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RFT1 RFT1 homolog [ Pogona vitticeps (central bearded dragon) ]

Gene ID: 110080640, updated on 15-Mar-2024

Summary

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Gene symbol
RFT1
Gene description
RFT1 homolog
See related
Ensembl:ENSPVIG00000018936
Gene type
protein coding
RefSeq status
MODEL
Organism
Pogona vitticeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Acrodonta; Agamidae; Amphibolurinae; Pogona
Orthologs
human mouse all
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Genomic context

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See RFT1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current pvi1.1 (GCF_900067755.1) Unplaced Scaffold NW_018150904.1 (1969519..1998197, complement)

NW_018150904.1Genomic Context describing neighboring genes Neighboring gene store-operated calcium entry regulator STIMATE Neighboring gene Scm like with four mbt domains 1 Neighboring gene protein kinase C delta Neighboring gene uncharacterized LOC110080637 Neighboring gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018150904.1 Unplaced Scaffold Reference pvi1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in dolichol-linked oligosaccharide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycolipid translocation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein RFT1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pogona vitticeps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference pvi1.1

Genomic

  1. NW_018150904.1 Reference pvi1.1

    Range
    1969519..1998197 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020796698.1 → XP_020652357.1  protein RFT1 homolog isoform X1

    UniProtKB/TrEMBL
    A0A6J0TVI3
    Related
    ENSPVIP00000025239.1, ENSPVIT00000031137.1
    Conserved Domains (1) summary
    pfam04506
    Location:24 → 537
    Rft-1; Rft protein

  2. XM_020796700.1 → XP_020652359.1  protein RFT1 homolog isoform X2

    UniProtKB/TrEMBL
    A0A6J0TXL4
    Conserved Domains (1) summary
    cl09326
    Location:1 → 476
    MATE_like; Multidrug and toxic compound extrusion family and similar proteins

  3. XM_020796699.1 → XP_020652358.1  protein RFT1 homolog isoform X2

    UniProtKB/TrEMBL
    A0A6J0TXL4
    Conserved Domains (1) summary
    cl09326
    Location:1 → 476
    MATE_like; Multidrug and toxic compound extrusion family and similar proteins
Nucleotide Protein
Heading Accession and Version

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