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CAPN3 calpain 3 [ Pogona vitticeps (central bearded dragon) ]

Gene ID: 110079031, updated on 15-Mar-2024

Summary

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Gene symbol
CAPN3
Gene description
calpain 3
See related
Ensembl:ENSPVIG00000018976
Gene type
protein coding
RefSeq status
MODEL
Organism
Pogona vitticeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Acrodonta; Agamidae; Amphibolurinae; Pogona
Orthologs
human mouse all
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Genomic context

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See CAPN3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
100 current pvi1.1 (GCF_900067755.1) Unplaced Scaffold NW_018150857.1 (362330..398444, complement)

NW_018150857.1Genomic Context describing neighboring genes Neighboring gene synaptosome associated protein 23 Neighboring gene zinc finger protein 106 Neighboring gene glucosidase alpha, neutral C Neighboring gene transmembrane protein 87A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018150857.1 Unplaced Scaffold Reference pvi1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pogona vitticeps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference pvi1.1

Genomic

  1. NW_018150857.1 Reference pvi1.1

    Range
    362330..398444 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020793775.1 → XP_020649434.1  calpain-3 isoform X1

    UniProtKB/TrEMBL
    A0A6J0TTH6
    Related
    ENSPVIP00000025884.1, ENSPVIT00000031902.1
    Conserved Domains (4) summary
    pfam00648
    Location:69 → 405
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:426 → 569
    Calpain_III; Calpain large subunit, domain III
    pfam16648
    Location:573 → 633
    Calpain_u2; Unstructured region on Calpain-3
    cd16190
    Location:633 → 801
    EFh_PEF_CAPN3; Calcium-activated neutral

  2. XM_020793776.1 → XP_020649435.1  calpain-3 isoform X2

    UniProtKB/TrEMBL
    A0A6J0TQQ5
    Conserved Domains (3) summary
    pfam00648
    Location:69 → 405
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:426 → 569
    Calpain_III; Calpain large subunit, domain III
    cd16190
    Location:599 → 767
    EFh_PEF_CAPN3; Calcium-activated neutral

  3. XM_020793777.1 → XP_020649436.1  calpain-3 isoform X3

    UniProtKB/TrEMBL
    A0A6J0TLM1
    Conserved Domains (2) summary
    cd15897
    Location:31 → 60
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:1 → 156
    EFh_PEF; The penta-EF hand (PEF) family
Nucleotide Protein
Heading Accession and Version

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