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SDC1 syndecan 1 [ Pogona vitticeps (central bearded dragon) ]

Gene ID: 110074251, updated on 15-Mar-2024

Summary

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Gene symbol
SDC1
Gene description
syndecan 1
See related
Ensembl:ENSPVIG00000005368
Gene type
protein coding
RefSeq status
MODEL
Organism
Pogona vitticeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Acrodonta; Agamidae; Amphibolurinae; Pogona
Orthologs
human mouse all
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Genomic context

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See SDC1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current pvi1.1 (GCF_900067755.1) Unplaced Scaffold NW_018150752.1 (601258..631626)

NW_018150752.1Genomic Context describing neighboring genes Neighboring gene pumilio RNA binding family member 2 Neighboring gene uncharacterized LOC110074235 Neighboring gene lysosomal protein transmembrane 4 alpha Neighboring gene matrilin 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018150752.1 Unplaced Scaffold Reference pvi1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pogona vitticeps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference pvi1.1

Genomic

  1. NW_018150752.1 Reference pvi1.1

    Range
    601258..631626
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020784286.1 → XP_020639945.1  syndecan-1

    UniProtKB/TrEMBL
    A0A6J0SYU1
    Related
    ENSPVIP00000006483.1, ENSPVIT00000008368.1
    Conserved Domains (1) summary
    pfam01034
    Location:262 → 324
    Syndecan; Syndecan domain
Nucleotide Protein
Heading Accession and Version

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