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LOC109998604 ras-related protein Rab-11B [ Labrus bergylta (ballan wrasse) ]

Gene ID: 109998604, updated on 26-Jun-2024

Summary

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Gene symbol
LOC109998604
Gene description
ras-related protein Rab-11B
See related
Ensembl:ENSLBEG00000006087
Gene type
protein coding
RefSeq status
MODEL
Organism
Labrus bergylta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Labriformes; Labridae; Labrus
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Genomic context

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See LOC109998604 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current fLabBer1.1 (GCF_963930695.1) 6 NC_089200.1 (32049523..32055905)
101 previous assembly BallGen_V1 (GCF_900080235.1) Unplaced Scaffold NW_018114913.1 (313405..319775, complement)

Chromosome 6 - NC_089200.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109977948 Neighboring gene phosphatidylinositol-4-phosphate 5-kinase, type I, gamma a Neighboring gene uncharacterized LOC136179427 Neighboring gene membrane-associated ring finger (C3HC4) 2 Neighboring gene ras-related protein Rab-11B Neighboring gene putative uncharacterized protein DDB_G0281733

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in recycling endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ras-related protein Rab-11B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_963930695.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLabBer1.1

Genomic

  1. NC_089200.1 Reference fLabBer1.1

    Range
    32049523..32055905
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020653522.3 → XP_020509178.1  ras-related protein Rab-11B

    UniProtKB/TrEMBL
    A0A3Q3EK11, A0A3Q3LGB0
    Related
    ENSLBEP00000007890.1
    Conserved Domains (1) summary
    cd01868
    Location:9 → 173
    Rab11_like; Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25
Nucleotide Protein
Heading Accession and Version

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