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LOC109998042 septin-7 [ Labrus bergylta (ballan wrasse) ]

Gene ID: 109998042, updated on 1-Aug-2024

Summary

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Gene symbol
LOC109998042
Gene description
septin-7
See related
Ensembl:ENSLBEG00000006770
Gene type
protein coding
RefSeq status
MODEL
Organism
Labrus bergylta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Labriformes; Labridae; Labrus
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Genomic context

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See LOC109998042 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_06 current fLabBer1.1 (GCF_963930695.1) 7 NC_089201.1 (11015263..11059077, complement)
101 previous assembly BallGen_V1 (GCF_900080235.1) Unplaced Scaffold NW_018114871.1 (193524..237143)

Chromosome 7 - NC_089201.1Genomic Context describing neighboring genes Neighboring gene exocyst complex component 3-like 1 Neighboring gene anillin, actin binding protein 2 Neighboring gene chemokine (C-C motif) ligand 35, duplicate 1 Neighboring gene sphingomyelin phosphodiesterase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables molecular adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytoskeleton-dependent cytokinesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell division site IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of septin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in septin ring IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
septin-7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_963930695.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLabBer1.1

Genomic

  1. NC_089201.1 Reference fLabBer1.1

    Range
    11015263..11059077 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020652755.3 → XP_020508411.1  septin-7 isoform X2

    UniProtKB/TrEMBL
    A0A3Q3EMT7
    Conserved Domains (2) summary
    cd01850
    Location:36 → 306
    CDC_Septin; CDC/Septin GTPase family
    cl25742
    Location:327 → 419
    ERM; Ezrin/radixin/moesin family

  2. XM_020652754.3 → XP_020508410.1  septin-7 isoform X1

    UniProtKB/TrEMBL
    A0A3Q3EMT7, A0A3Q3LJ73
    Related
    ENSLBEP00000008830.1
    Conserved Domains (2) summary
    cd01850
    Location:37 → 307
    CDC_Septin; CDC/Septin GTPase family
    cl25742
    Location:328 → 420
    ERM; Ezrin/radixin/moesin family
Nucleotide Protein
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