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LOC109993753 ras-related protein rab7 [ Labrus bergylta (ballan wrasse) ]

Gene ID: 109993753, updated on 26-Jun-2024

Summary

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Gene symbol
LOC109993753
Gene description
ras-related protein rab7
See related
Ensembl:ENSLBEG00000017798
Gene type
protein coding
RefSeq status
MODEL
Organism
Labrus bergylta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Labriformes; Labridae; Labrus
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Genomic context

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See LOC109993753 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current fLabBer1.1 (GCF_963930695.1) 5 NC_089199.1 (15335185..15347985)
101 previous assembly BallGen_V1 (GCF_900080235.1) Unplaced Scaffold NW_018114680.1 (169992..182804, complement)

Chromosome 5 - NC_089199.1Genomic Context describing neighboring genes Neighboring gene GATA binding protein 2b Neighboring gene fibroleukin Neighboring gene actin related protein 2/3 complex, subunit 4 Neighboring gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endosome to lysosome transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phagosome-lysosome fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in late endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in phagocytic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ras-related protein rab7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_963930695.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLabBer1.1

Genomic

  1. NC_089199.1 Reference fLabBer1.1

    Range
    15335185..15347985
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020646822.3 → XP_020502478.1  ras-related protein rab7

    UniProtKB/TrEMBL
    A0A3Q3MRL5
    Related
    ENSLBEP00000023215.1
    Conserved Domains (1) summary
    cd01862
    Location:9 → 179
    Rab7; Rab GTPase family 7 (Rab7)
Nucleotide Protein
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