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si:dkey-13a21.4 uncharacterized LOC109983865 [ Labrus bergylta (ballan wrasse) ]

Gene ID: 109983865, updated on 29-Jun-2024

Summary

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Gene symbol
si:dkey-13a21.4
Gene description
uncharacterized LOC109983865
See related
Ensembl:ENSLBEG00000018180
Gene type
protein coding
RefSeq status
MODEL
Organism
Labrus bergylta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Labriformes; Labridae; Labrus
Orthologs
zebrafish all
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Genomic context

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See si:dkey-13a21.4 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current fLabBer1.1 (GCF_963930695.1) 5 NC_089199.1 (16348259..16349930, complement)
101 previous assembly BallGen_V1 (GCF_900080235.1) Unplaced Scaffold NW_018114476.1 (1145954..1147987)

Chromosome 5 - NC_089199.1Genomic Context describing neighboring genes Neighboring gene red-sensitive opsin Neighboring gene opsin 1 (cone pigments), short-wave-sensitive 2 Neighboring gene host cell factor C1a Neighboring gene GATA binding protein 1a Neighboring gene bcl-2-like protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endosome to lysosome transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phagosome-lysosome fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in late endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in phagocytic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ras-related protein rab7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_963930695.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLabBer1.1

Genomic

  1. NC_089199.1 Reference fLabBer1.1

    Range
    16348259..16349930 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020633780.3 → XP_020489436.1  ras-related protein rab7

    UniProtKB/TrEMBL
    A0A3Q3FWK0
    Related
    ENSLBEP00000023704.1
    Conserved Domains (1) summary
    cl21455
    Location:9 → 177
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
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