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LOC109982733 elongation factor 2b [ Labrus bergylta (ballan wrasse) ]

Gene ID: 109982733, updated on 26-Jun-2024

Summary

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Gene symbol
LOC109982733
Gene description
elongation factor 2b
See related
Ensembl:ENSLBEG00000016853
Gene type
protein coding
RefSeq status
MODEL
Organism
Labrus bergylta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Labriformes; Labridae; Labrus
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Genomic context

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See LOC109982733 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_06 current fLabBer1.1 (GCF_963930695.1) 6 NC_089200.1 (19109426..19118798)
101 previous assembly BallGen_V1 (GCF_900080235.1) Unplaced Scaffold NW_018114460.1 (1219429..1229045)

Chromosome 6 - NC_089200.1Genomic Context describing neighboring genes Neighboring gene cAMP responsive element binding protein 3-like 3a Neighboring gene relaxin family peptide receptor 3.2b Neighboring gene small nucleolar RNA SNORD37 Neighboring gene high mobility group 20B Neighboring gene unc-13 homolog A (C. elegans) Neighboring gene unconventional myosin-Va

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation elongation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translational elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
elongation factor 2b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_963930695.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLabBer1.1

Genomic

  1. NC_089200.1 Reference fLabBer1.1

    Range
    19109426..19118798
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020632070.3 → XP_020487726.1  elongation factor 2b

    UniProtKB/TrEMBL
    A0A3Q3MNJ5
    Related
    ENSLBEP00000021960.1
    Conserved Domains (1) summary
    PTZ00416
    Location:1 → 858
    PTZ00416; elongation factor 2; Provisional
Nucleotide Protein
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