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sgcd sarcoglycan, delta (dystrophin-associated glycoprotein) [ Monopterus albus (swamp eel) ]

Gene ID: 109968703, updated on 14-Mar-2024

Summary

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Gene symbol
sgcd
Gene description
sarcoglycan, delta (dystrophin-associated glycoprotein)
See related
Ensembl:ENSMALG00000021407
Gene type
protein coding
RefSeq status
MODEL
Organism
Monopterus albus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Synbranchidae; Monopterus
Orthologs
human zebrafish all
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Genomic context

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See sgcd in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current M_albus_1.0 (GCF_001952655.1) Unplaced Scaffold NW_018128039.1 (621588..863521, complement)

NW_018128039.1Genomic Context describing neighboring genes Neighboring gene rho GTPase-activating protein 7-like Neighboring gene uncharacterized LOC109968708

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018128039.1 Unplaced Scaffold Reference M_albus_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan
Names
sarcoglycan delta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Monopterus albus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_albus_1.0 Primary Assembly

Genomic

  1. NW_018128039.1 Reference M_albus_1.0 Primary Assembly

    Range
    621588..863521 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020615170.1 → XP_020470826.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A3Q3KC95
    Conserved Domains (1) summary
    pfam04790
    Location:37 → 294
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_020615172.1 → XP_020470828.1  delta-sarcoglycan isoform X3

    UniProtKB/TrEMBL
    A0A3Q3KC95
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 279
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_020615174.1 → XP_020470830.1  delta-sarcoglycan isoform X4

    UniProtKB/TrEMBL
    A0A3Q3KMS6
    Related
    ENSMALP00000030963.1, ENSMALT00000031509.1
    Conserved Domains (1) summary
    pfam04790
    Location:37 → 250
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_020615168.1 → XP_020470824.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A3Q3KC95
    Conserved Domains (1) summary
    pfam04790
    Location:37 → 294
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  5. XM_020615173.1 → XP_020470829.1  delta-sarcoglycan isoform X3

    UniProtKB/TrEMBL
    A0A3Q3KC95
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 279
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  6. XM_020615169.1 → XP_020470825.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A3Q3KC95
    Conserved Domains (1) summary
    pfam04790
    Location:37 → 294
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  7. XM_020615171.1 → XP_020470827.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A3Q3KC95
    Related
    ENSMALP00000030975.1, ENSMALT00000031521.1
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 280
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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