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uba52 ubiquitin A-52 residue ribosomal protein fusion product 1 [ Monopterus albus (swamp eel) ]

Gene ID: 109966870, updated on 14-Mar-2024

Summary

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Gene symbol
uba52
Gene description
ubiquitin A-52 residue ribosomal protein fusion product 1
See related
Ensembl:ENSMALG00000017980
Gene type
protein coding
RefSeq status
MODEL
Organism
Monopterus albus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Synbranchidae; Monopterus
Orthologs
human zebrafish all
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Genomic context

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See uba52 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current M_albus_1.0 (GCF_001952655.1) Unplaced Scaffold NW_018128000.1 (476508..478539)

NW_018128000.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109966872 Neighboring gene arrestin domain containing 2 Neighboring gene homer scaffold protein 3 Neighboring gene uncharacterized LOC109966887

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018128000.1 Unplaced Scaffold Reference M_albus_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein tag activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in modification-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin-60S ribosomal protein L40

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Monopterus albus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_albus_1.0 Primary Assembly

Genomic

  1. NW_018128000.1 Reference M_albus_1.0 Primary Assembly

    Range
    476508..478539
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020612077.1 → XP_020467733.1  ubiquitin-60S ribosomal protein L40

    UniProtKB/TrEMBL
    A0A3Q3JXZ6
    Related
    ENSMALP00000025854.1, ENSMALT00000026332.1
    Conserved Domains (2) summary
    cd01803
    Location:1 → 76
    Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin
    pfam01020
    Location:79 → 126
    Ribosomal_L40e; Ribosomal L40e family
Nucleotide Protein
Heading Accession and Version

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