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capn3a calpain 3a, (p94) [ Monopterus albus (swamp eel) ]

Gene ID: 109962461, updated on 14-Mar-2024

Summary

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Gene symbol
capn3a
Gene description
calpain 3a, (p94)
See related
Ensembl:ENSMALG00000000276
Gene type
protein coding
RefSeq status
MODEL
Organism
Monopterus albus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Synbranchidae; Monopterus
Also known as
capn3
Orthologs
human zebrafish all
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Genomic context

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See capn3a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
100 current M_albus_1.0 (GCF_001952655.1) Unplaced Scaffold NW_018127944.1 (219255..227609)

NW_018127944.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 87A Neighboring gene glucosidase, alpha; neutral C Neighboring gene zinc finger protein 106a Neighboring gene proton activated chloride channel 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018127944.1 Unplaced Scaffold Reference M_albus_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3
Names
calpain 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Monopterus albus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_albus_1.0 Primary Assembly

Genomic

  1. NW_018127944.1 Reference M_albus_1.0 Primary Assembly

    Range
    219255..227609
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020604191.1 → XP_020459847.1  calpain-3 isoform X1

    UniProtKB/TrEMBL
    A0A3Q3ICY6
    Related
    ENSMALP00000000635.1, ENSMALT00000000671.1
    Conserved Domains (4) summary
    pfam00648
    Location:51 → 351
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:372 → 515
    Calpain_III; Calpain large subunit, domain III
    cd15897
    Location:545 → 588
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:545 → 727
    EFh_PEF; The penta-EF hand (PEF) family

  2. XM_020604192.1 → XP_020459848.1  calpain-3 isoform X2

    UniProtKB/TrEMBL
    A0A3Q3ICY6
    Related
    ENSMALP00000000609.1, ENSMALT00000000645.1
    Conserved Domains (4) summary
    pfam00648
    Location:51 → 351
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:372 → 515
    Calpain_III; Calpain large subunit, domain III
    cd15897
    Location:545 → 573
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:545 → 712
    EFh_PEF; The penta-EF hand (PEF) family
Nucleotide Protein
Heading Accession and Version

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