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plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 [ Monopterus albus (swamp eel) ]

Gene ID: 109952454, updated on 14-Mar-2024

Summary

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Gene symbol
plod3
Gene description
procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
See related
Ensembl:ENSMALG00000005482
Gene type
protein coding
RefSeq status
MODEL
Organism
Monopterus albus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Synbranchidae; Monopterus
Orthologs
human zebrafish all
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Genomic context

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See plod3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
100 current M_albus_1.0 (GCF_001952655.1) Unplaced Scaffold NW_018128340.1 (251317..265500)

NW_018128340.1Genomic Context describing neighboring genes Neighboring gene C-type lectin domain family 10 member A-like Neighboring gene C-type lectin domain family 10 member A-like Neighboring gene cytochrome b5 domain-containing protein 1 Neighboring gene zinc finger, HIT-type containing 1 Neighboring gene putative protein TPRXL Neighboring gene serrate RNA effector molecule homolog Neighboring gene uncharacterized LOC109952453

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018128340.1 Unplaced Scaffold Reference M_albus_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen glucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen-lysine 5-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-lysine hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
procollagen-lysine,2-oxoglutarate 5-dioxygenase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Monopterus albus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_albus_1.0 Primary Assembly

Genomic

  1. NW_018128340.1 Reference M_albus_1.0 Primary Assembly

    Range
    251317..265500
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020587538.1 → XP_020443194.1  procollagen-lysine,2-oxoglutarate 5-dioxygenase 3

    UniProtKB/TrEMBL
    A0A3Q3IRL1
    Related
    ENSMALP00000007738.1, ENSMALT00000007903.1
    Conserved Domains (1) summary
    smart00702
    Location:554 → 717
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
Nucleotide Protein
Heading Accession and Version

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