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LOC109911662 type 2 lactosamine alpha-2,3-sialyltransferase [ Rhincodon typus (whale shark) ]

Gene ID: 109911662, updated on 30-Nov-2023

Summary

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Gene symbol
LOC109911662
Gene description
type 2 lactosamine alpha-2,3-sialyltransferase
See related
EnsemblRapid:ENSRTYG00015013242
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhincodon typus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Orectolobiformes; Rhincodontidae; Rhincodon
Also known as
st3gal6
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Genomic context

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See LOC109911662 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
14
Annotation release Status Assembly Chr Location
101 current sRhiTyp1.1 (GCF_021869965.1) 11 NC_063342.1 (26856745..26943043, complement)
100 previous assembly ASM164234v2 (GCF_001642345.1) Unplaced Scaffold NW_018027575.1 (196502..254711, complement)

Chromosome 11 - NC_063342.1Genomic Context describing neighboring genes Neighboring gene discoidin, CUB and LCCL domain containing 2 Neighboring gene collagen, type VIII, alpha 1a Neighboring gene adhesion G-protein coupled receptor G7-like Neighboring gene jagunal homolog 1a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-galactoside alpha-2,3-sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
type 2 lactosamine alpha-2,3-sialyltransferase
Names
ST3 beta-galactoside alpha-2,3-sialyltransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhincodon typus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference sRhiTyp1.1

Genomic

  1. NC_063342.1 Reference sRhiTyp1.1

    Range
    26856745..26943043 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048602504.1 → XP_048458461.1  type 2 lactosamine alpha-2,3-sialyltransferase

    Related
    ENSRTYP00015020578.1, ENSRTYT00015022827.1

  2. XM_048602501.1 → XP_048458458.1  type 2 lactosamine alpha-2,3-sialyltransferase

  3. XM_048602503.1 → XP_048458460.1  type 2 lactosamine alpha-2,3-sialyltransferase

  4. XM_048602502.1 → XP_048458459.1  type 2 lactosamine alpha-2,3-sialyltransferase

  5. XM_048602500.1 → XP_048458457.1  type 2 lactosamine alpha-2,3-sialyltransferase

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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